All functions
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gmpd
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Host-Parasite interaction data from the Global Mammal Parasite Database 2.0 |
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lof()
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A function to left order a matrix based on first occurrence per row |
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mammal_supertree
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Fritz et al. (2009) mammal supertree |
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network_clean()
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A function to clean the network and tree: |
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network_est()
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A function to run an MCMC sampler based on the Iterative Conditional Modes (ICM) algorithm: |
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plot_Z()
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A function to plot a bipartite interaction matrix |
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plot_degree()
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A function to plot degree distributions |
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rocCurves()
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A function to calculate and plot ROC curves |
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sample_parameter()
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A function to sample the estimated parameters and construct the posterior probability matrix |
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topPairs()
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A function to list the top predicted interactions from a model |